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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with … Laboratory (Berkeley Lab), relied on a model grass system for answers. Their work  recently appeared in  Nature … and  B. hybridum are all available on the JGI’s plant portal  Phytozome v13 . Researchers from the following …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative … the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of … the literature. They then used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of …
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Partners
… The JGI leverages its existing partnerships and develops others providing complementary expertise to … has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further … to datasets, workflows, and tools to seamlessly expand data functionality. Close partnerships with other user facilities …
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An Integrative Computational Approach for Prioritization of Genomic Variants
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Data Policy & Support
… Read more about our data management practices and the resources we provide. … Read our research integrity and data code of conduct. … Data Management at the JGI …
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State University led the effort to sequence … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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Comparative transcriptomics as a guide to natural product discovery and biosynthetic gene cluster functionality
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. … Science Program and was already available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm plant host health. … health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. … 80 previously published fungal genomes on the JGI data portal MycoCosm . They looked for genes known to be involved …
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Taking Stock of the Known and Unknown Microbial Space
… microbial diversity hotspots Over the past few decades, advancements in sequencing technologies have led to an … the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We … Information (NCBI) GenBank collection and on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) database. …
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