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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who … selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads … and characterize viral diversity, understand the role of viruses in natural ecosystems, and functionally explore …
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Extensive epigenetic reprogramming during the life cycle of Marchantia polymorpha
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A Novel Freshwater to Marine Evolutionary Transition Revealed within Methylophilaceae Bacteria from the Arctic Ocean
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Dataset of 143 metagenome-assembled genomes from the Arctic and Atlantic Oceans, including 21 for eukaryotic organisms
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … long been a significant challenge in genomics. Enter GenomeOcean, a powerful generative model  now available to the … DNA sequences mimicking an array of microbial life. By leveraging massive user-generated datasets at the JGI …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth … Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on a changing planet. Transcript for Audio   ALISON:  … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Partnerships: Myco-Ed
… Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching labs. The purpose of the program is to: train students and professors in laboratory techniques and data … Beyond providing a scalable solution for production of high-quality …
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Complete Genome Sequences of Two Phylogenetically Distinct Nitrospina Strains Isolated from the Atlantic and Pacific Oceans
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Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812T)
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Microorganisms Involved in Methylmercury Demethylation and Mercury Reduction are Widely Distributed and Active in the Bathypelagic Deep Ocean Waters
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last decade” by Clarivate Analytics. This year’s list features 6,849 … and evaluates multiple predictions to reliably match viruses with their archaea and bacteria hosts.  Jeremy …
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