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Comparison of short-read and long-read metagenome assemblies in a natural soil community highlights systematic bias in recovery of high-diversity populations
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Co-occurrence networks reveal more complexity than community composition in resistance and resilience of microbial communities
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Jane Grimwood Named HudsonAlpha Genomics Chair
… City. Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library … has appeared on the annual Highly Cited Researchers list assembly by Clarivate Analytics. In 2020, she was named a … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 …
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute … at UC Berkeley. Dr. Pennacchio received his Ph.D in 1998 from the Department of Genetics at Stanford University where … Genomics Resource” 2021-  Co-Chair, “Advances in Genome Biology & Technology- Agriculture” 2021-  Weill …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … : “The best part of the internship is the welcome and open community of the JGI. Everyone is excited to learn and share …
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Metagenomes from Arctic Soil Microbial Communities from the Barrow Environmental Observatory, Utqiaġvik, AK, USA
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Frederik Schulz
… Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of … cycles. He provides his expertise to the JGI user community and supports various user projects in the … program on agnostic pathogen detection and surveillance in complex samples. …
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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis identified … Communications paper . The work was partly enabled by a JGI Community Science Program (CSP) proposal led by INRAE’s …
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Making a Lichen Together
… For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … communication and cooperation. Their partnership is widespread and cosmopolitan: more than 20,000 ascomycete species … autonomy; they can be isolated and grown separately from each other. A possible explanation, according to the …
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High-Quality Draft Genome Sequences of the Uncultured Delta3 Endosymbiont (Deltaproteobacteria) Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… determination. Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … covering the entire kingdom of fungi. “The information from this project may also have a practical relevance with …
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Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs
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