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Chromosomal integration of complex DNA constructs using CRAGE and CRAGE-Duet systems
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Olpidium, The Key to the Origin of Terrestrial Fungi
Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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DOE Metrics
… developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress … capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new computational … 8734 2005 28 33.63 8400 8760 * Reflects actual data due to analysis beyond fiscal year-end close. …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… culture. Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along … factor of 16. The same year, the JGI expanded its existing Integrated Microbial Genomes & Microbiomes database to …
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Natural Prodcast Episode 1: The Primer, Part 1
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … in a minute – we work for the US Department of Energy Joint Genome Institute, or JGI. JGI is a DOE Office of Science … so now here at the JGI, I work with all of the sequencing data that the JGI produces to try to find and identify …
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Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics
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Accelerating Metagenomics Discoveries with Deep Learning
… an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered … biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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User Advisory Committees
All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … effective management and strategic objectives for the JGI’s data science, informatics and information technology (IT) … management and strategic objectives of the microbial and metagenome programs. The committee serves as the program's …
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Metagenomic analysis of a stable trichloroethene-degrading microbial community
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Integrating microarray analysis and the soybean genome to understand the soybeans iron deficiency response
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JGI@25: From Life at the Extremes to Editing Genomes
Data Science group led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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SoyCSN: Soybean context‐specific network analysis and prediction based on tissue‐specific transcriptome data
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