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Eight genome sequences of bacterial environmental isolates from Marr Pond, Antarctica
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Purifying the Impure: Sequencing Metagenomes and Metatranscriptomes from Complex Animal-associated Samples
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that could prove fruitful for saving Citrus from greening disease. You’ve probably never heard of … P. trifoliata ’s hardiness, according to Zhanao Deng, an environmental horticulture scientist of the University of …
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What Happens Underground Influences Global Nutrient Cycles
… for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user … Nevada mountain range since 2014 to learn more about the microbial responses and feedbacks to warming through the … omics and computational resources with JGI’s cutting-edge genomics, DNA synthesis and complementary capabilities. …
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Metagenomes from Arctic Soil Microbial Communities from the Barrow Environmental Observatory, Utqiaġvik, AK, USA
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JGI Mural
… The JGI mural on the 3rd floor of the Integrative Genomics Building whimsically references … of iconic JGI contributions to advancing the frontiers of environmental and energy genomics. Click on the images below …
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Laminarin stimulates single cell rates of sulfate reduction whereas oxygen inhibits transcriptomic activity in coastal marine sediment
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products and their … deciphered function and host-symbiont interplay using metagenomics. Taking on a Research Scientist position in 2007, she switched gears from metagenomics to single-cell genomics, which is now her primary interest and …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … challenges.   Scanning the California oak woodlands from the air, large swaths of the bleached, skeletal remains … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Webinar: MycoCosm Tutorial
… Do you accept oomycetes to be proposed for genome sequencing, or only “true fungi”? A(nswer): Our focus is on … While are still working on finalizing the tree and related publication the tree is still in development and not … Q: Has there been any interest in using JBrowse / JB2  for genomic views ( e.g.,: …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, more … (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … who encounter an elephant for the first time. Based on the single body part each blind man touches – a tusk, the ear, …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how … Now, with improvements to DNA Affinity Purification Sequencing (DAP-seq), these barriers are falling. As  … challenges by using  in vitro -expressed TFs and fragmented genomic DNA, eliminating the need for living cells. This …
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