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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … in agronomic traits related to nutritional quality and disease resistance  due to the sequence’s availability via …
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Analysis of Brachypodium genomes with genome-wide optical maps
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Comparative Genomics Analysis of Trichoderma reesei Strains
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Performance evaluation and tuning of BioPig for genomic analysis
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User Executive Committee Charter
… users and their science including technical capabilities offered, proposal review procedures, and the annual user … recommendations to the JGI regarding technical capabilities offered, including areas where more or less capacity is … annual JGI User Meeting, as well as input on other aspects of the meeting such as duration, location, and cost; …
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A roadmap for equitable reuse of public microbiome data
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… really fully exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard about the JGI synthesis … of terpenoids, naturally occurring organic chemicals with a wide range of potential applications. Q&A from the Webinar …
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Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control
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Mining Metagenomes for Cas Proteins
… possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by … proteins and were also found next to cas1 genes. Further analysis led to the identification of a new family of Cas … of publicly accessible metagenomic datasets from a wide variety of ecosystems around the world, conducting …
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Marine Microbe Contains Multitudes
… microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … periodically at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, … ecologically distinct clusters, or ecotypes. These ecotypes fall into two main groups: two ecotypes dwell in the sunlit …
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