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High Density Genetic Maps of Seashore Paspalum Using Genotyping-By-Sequencing and Their Relationship to The Sorghum Bicolor Genome
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … at Lawrence Berkeley National Laboratory (Berkeley Lab) sequenced 1 trillion bases — a terabase — of soil RNA for … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI@25: Strengthening Soybean
… and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … the first legume species with a published complete draft genome sequence. At the time, the vital global source of … podcast minisode.)  In 2016, the JGI accepted a proposal from Sebastien Duplessis of the French National Institute …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at … possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by … Data Science group mined the IMG/M system with its large collection of publicly accessible metagenomic datasets from …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… challenges.   Scanning the California oak woodlands from the air, large swaths of the bleached, skeletal remains … trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism
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Open Frameworks Training the Next Generation of Scientists
… involving academic faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User … Experimental Design and Sample Metadata (Module 2), Sample Collection and Processing (Module 3), Data Analysis in KBase … readily available via the KBase platform. This effort grew from a  modularized training program with the aim for future …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint … a condition known as polyploidy. The multiple copies arise from past genome duplication, which occurs in two basic … and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is …
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An Integrated Dataset to Understand Ecosystem Interaction
… processes for the first time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as … were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …
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Gene Expression: From On-Off Switch to Dial
… researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … area in the DNA, to determine which targets might benefit from an intermediate level of expression. Similar to the … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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Metabolomic, photoprotective, and photosynthetic acclimatory responses to post‐flowering drought in sorghum
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A sorghum pangenome reference improves global crop trait discovery
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