Results

Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks
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Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen
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MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes.
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Genome Streamlining, Proteorhodopsin, and Organic Nitrogen Metabolism in Freshwater Nitrifiers
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Bacillus anthracis genome organization in light of whole transcriptome sequencing
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The Genetically Remote Pathogenic Strain NVH391-98 of the Bacillus cereus Group Is Representative of a Cluster of Thermophilic Strains▿ †
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2025 NeLLi Symposium
… and Agenda Coming Soon!  Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research Institute, the … to a new appreciation for the extent of diversity. The phylogenetic and functional characterization of this novel …
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How Filamentous Fungi Sense Food
… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … and Development Program of Berkeley Lab, among other organizations. … We acknowledge the use of deletion strains …
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Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species
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Daniel Udwary
… group. His research interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene clusters in bacteria and fungi. Prior to joining the … (1996) … List available on Google Scholar … Education … Publications …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass  … (polyploidy) and insights into the dynamics of gene expression as it grows back vigorously year after year …
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