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Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy
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Phylogenomic insights into the taxonomy, ecology, and mating systems of the lorchel family Discinaceae (Pezizales, Ascomycota)
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass … grow without added fertilizer. Researchers at CABBI and elsewhere are following up on these discoveries to develop new …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton … and of gene editing as a new tool. In order to know exactly where to use your incredibly precise tool, you have to know …
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MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
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Genomic and proteomic biases inform metabolic engineering strategies for anaerobic fungi
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SPRUCE-ing Up Science
… one of the first students to participate in the DOE Joint Genome Institute (JGI)-UC Merced internship program, … skills. Their questions were often really focused and it informed me of what people were looking for and what I was … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and … calls. These documents have been shared with permission from the PIs who drafted them.  …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field of genomics through open access to … are requested to be held until a specified date, or the publication date, whichever comes first. For nearly 40 … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse gas 20 … in short-chain alkane oxidation. “We propose a scenario where methanogenesis is possibly the most ancient energetic … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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