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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora … used a multi-omics approach to reconstruct and model gene regulatory pathways used by the filamentous fungus  … and decide on the order in which this fungus breaks down plant cell wall materials including lignin, cellulose and …
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Filling in the Plant Tree of Life
… What if we understood plants and how they adapt to their ever-changing environments better? We could unlock new innovations to drive more productive food, medicine, and …
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Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes
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Distinct temporal diversity profiles for nitrogen cycling genes in a hyporheic microbiome
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Plant myo-inositol transport influences bacterial colonization phenotypes
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for … in natural ecosystems, and functionally explore viral genetic diversity.  In 2021, he was among those selected by …
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Better Crops With a Pointillist Approach to Plant Genomics
… In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants grow, get nutrients, weather drought, and …
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Elucidating Drought-Tolerance Mechanisms in Plant Roots through 1H NMR Metabolomics in Parallel with MALDI-MS, and NanoSIMS Imaging Techniques
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A global soil plasmidome resource unveils functional and ecological roles of plasmids in soil microbiomes
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Denoising inferred functional association networks obtained by gene fusion analysis
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JGI announces final round of 2022 Functional Genomics awardees
… research from potential users who need help translating genomic information into biological function. Through our CSP … and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the final …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … functional diversity: the novel protein families and novel functions in as-yet unveiled microbes. Harnessing the … sequencing allows researchers to study the entire genetic makeup of these communities via whole genome …
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