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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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A roadmap for equitable reuse of public microbiome data
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), and collaborators across multiple … Lab’s Applied Mathematics and Computational Research Division,” Pavlopoulos said. “They developed parallel …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … fungal mitochondrial genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … The work conducted by the U.S. Department of Energy Joint Genome Institute …
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A bacterial toolkit for plants
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Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes
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Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach
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Mapping the membrane proteome of anaerobic gut fungi identifies a wealth of carbohydrate binding proteins and transporters
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Gill bacteria enable a novel digestive strategy in a wood-feeding mollusk
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … along with water content. The class had to work collaboratively and creatively to come up with a sense of what … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Viral Genomics Group
… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by … group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … involves both experimental and computational exploration of uncultivated viral diversity, characterization of …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … after her internship. “That level of commitment and collaboration between intern and mentor is what we strive for,” …
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