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Seasonal enhancement of the viral shunt catalyzes a subsurface oxygen maximum in the Sargasso Sea
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Identifying the Microbial Cleanup Crew at a Superfund Site
… in New Mexico via leakage from a local dry-cleaner. Researchers  identified two bacteria,  Dehalococcoides mccartyi and  Dehalobacter … amount of what’s allowed in drinking water. However, in the deeper sites, toxic chemicals remain.  To identify the … Partial support was provided by the National Center for Research Resources (NCRR) (5P20RR016480-12) and the National …
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Active anaerobic methane oxidation and sulfur disproportionation in the deep terrestrial subsurface
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Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype
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De novo Nanopore read quality improvement using deep learning
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI … all fungi, and found that some of these genes have moved from the mitochondria into the nuclear genome over … The work conducted by the U.S. Department of Energy Joint Genome Institute … a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy …
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Diverse events have transferred genes for edible seaweed digestion from marine to human gut bacteria
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Cell Extracts from Bacteria and Yeast Retain Metabolic Activity after Extended Storage and Repeated Thawing
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm microbial diversity is wilder than ever. … living everywhere from soils and stomachs to the deep sea are capable of doing a lot of unique things when it … that the majority of these protein families belonged to bacteria and viruses, though 6 million of the sequences …
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Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
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High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China
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Cataloging the Microbes that Manage the Health of River Systems
… watersheds. The Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds in the … the core microbes are and what they do—can help researchers develop predictive watershed scale models to …
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