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Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements metagenomics studies. The Science Researchers demonstrated … approaches including amplicon and metagenomic sequencing. For example, they showed that the composition of the … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into … by minimizing flood risks and filtering water. Peat formed there over thousands of years sequesters more carbon … and others that preferred the hollows. Those genome sequences showed not only that the sex of a sphagnum plant …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have … and cyanobacteria create the air we breathe and the fuel for food webs as they turn carbon dioxide and water into … of that machine — photosynthesizers’ DNA and RNA. These sequences provide a list of machine parts, and an idea of …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when … down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and microbial … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences …
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DOE JGI Metagenome Workflow
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Terabase-scale metagenome coassembly with MetaHipMer
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have quickly accelerated … on giant virus diversity, and how sequencing and bioinformatics have sped up the study of giant viruses. The … This work was conducted by the US Department of Energy Joint Genome …
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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Mateus Fiamenghi
… Mateus’s research is focusing on the identification and analysis of Mobile Genetic Elements from Metagenomic Data.  Mateus’s GitHub …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into … of the Earth’s atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta … of enzymes.” Gribaldo will be speaking on “Exploration of Metagenomic Data to Understand the Diversity and Evolution …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint … Takemura, whose voice you’ll hear in a minute – we work for the US Department of Energy Joint Genome Institute, or … I have been in – working in secondary metabolism for almost 20 years now. Which when I did the math, that was a surprise …
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