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Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes
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Natural Prodcast Episode 4: Nancy Keller
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … use natural products necessarily. Fungi are large. They’re microbes, but they’re large microbes. And they have all …
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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Niche differentiation of bacteria and fungi in carbon and nitrogen cycling of different habitats in a temperate coniferous forest: A metaproteomic approach
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Disentangling the effects of sulfate and other seawater ions on microbial communities and greenhouse gas emissions in a coastal forested wetland
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Taxonomic and functional restoration of tallgrass prairie soil microbial communities in comparison to remnant and agricultural soils
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … — cellulose, hemicellulose, and the toughest molecule, lignin. Understanding Lentinula genomes and their evolution … Specifically, many species had very similar plant cell wall degrading enzymes (PCWDEs), including carbohydrate-active …
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Micro-Scale Applications Group
Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also … sequence analysis to recover the genomes of uncultivated microbes. We also apply labeling strategies that allow us to …
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Benjamin Cole
… to their biotic environment using emerging single-cell characterization technologies (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic … of Cell Identity as an R package … Education … Selected Publications … Software …
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Abundant nitrite-oxidizing metalloenzymes in the mesopelagic zone of the tropical Pacific Ocean
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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