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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
As SIP experiments shed more light on microbial communities than ever before — especially with … this was the first workshop of its kind on SIP metagenomics,” Malmstrom said.  Increasingly, efforts like … DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute … arise from past genome duplication, which occurs in two basic ways. In “autopolyploids”, genome duplication occurs … each ancestor is called a subgenome. Session and Rokhsar, building on work with former JGI postdoc Jarrod Chapman, …
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Behind the Paper: Hot Springs Metagenomics
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A Bioinformatician's Guide to Metagenomics
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper … of water help regulate. However, the microbes also interact with compounds like fertilizers and microplastics that might …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… strategic plan outlines how the JGI will advance the bioeconomy, leveraging partnerships to advance foundational … .) This plan aligns the DOE Office of Science user facility with broader national efforts to promote and stimulate a … improving connectivity across the DOE data ecosystem, building and harnessing partnerships, enhancing the JGI’s …
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on presentations to peatlands Travis Lawrence sits in … Oak Ridge, Tennessee. Recently, Lawrence, in collaboration with researchers from ORNL, Lawrence Berkeley National … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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Frequently Asked Questions: Proposal Submission
See below for a list of Frequently Asked Questions about our proposal submission process. You can review … at any career stage. Generally, most users are able to work with Berkeley Lab.  However, users from certain countries … proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New …
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level … prior to shipment to the  JGI. The documents below (posted with permission) demonstrate the importance of proper …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… vitamins; zinc fuels some of their most important functions. Even in the chilly waters of Antarctica, tiny … what makes polar photosynthesizers tick. He’s working with researchers at the U.S. Department of Energy (DOE) … explores genomics of algal diversity and biology to support basic science as well as bioenergy and biomanufacturing. The …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… single drop of water could outnumber a small city’s population, the number of viruses in the same drop—the vast majority … been co-cultivated with amoeba or with their hosts, though metagenomics is now making it possible to seek out and … DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
Congratulations to the 2023 Highly Cited Researchers from the … influence in their chosen field or fields through the publication of multiple highly cited papers during the last … Nikos Kyrpides, Natalia Ivanova and Simon Roux, along with data from a consortium that included Susannah Tringe …
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