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… genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … mitochondrial genome into the nuclear genome over time — supporting the notion that the boundary between these two … sequences. The next step applied metagenomic binning (grouping sequencing reads by their likely organism of origin) …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a … for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would … focused on in-depth exploration of ecology-related groups of fungi. The 1KFG project has brought together over 400 …

… annotation in fungal genomes. The Science In a proof-of-concept study, researchers demonstrated that a new … associations between genotype – an organism’s genetic makeup – and phenotype – an organism’s physical characteristics, … biofuel production. Efforts such as the 1000 Fungal Genomics Project led by the DOE Joint Genome Institute …

… (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … analyses? A:  For the JGI  New Investigator and  Functional Genomics proposal calls, projects can request up to 50 polar and 150 nonpolar metabolomics analyses. For …

… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … Annotation team within the JGI’s Microbiome Data Science group. “Turns out that despite all the genomes we've sequenced, … The study, added co-first author Rekha Seshadri, is a wake-up call to revive the art of hands-on microbiology and …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a … Phaseolus as a test model quite frequently for R&D in plant genomics, because it is an inbred dicot,” Schmutz explained, … retain their iron content and have a longer shelf-life — up to four years. Work is now underway to transfer the trait …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a … “a revolutionary impact on the life sciences.” Building upon CRISPR-Cas9 work, the Doudna lab at UC Berkeley seeks … led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense collection …

… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a Research … years where he was a driving force behind the development of numerous genomic resources that fostered the widespread … plants interact with their microbiomes. In addition, his group conducts comparative genomic research to understand the …

… Summer 2025 marked the second year of Alabama A&M University students coming to the DOE Joint … mentors Yi Zhai and John Vogel from the Plant Functional Genomics Group to study the effects of  Brachypodium distachyon plant …

… at the Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain … analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead at … National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral positions at …

… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … Roux established and currently leads the Viral Genomics group at the JGI to further explore the ecological and … Neri et al., 2023. Expansion of the global RNA virome reveals diverse clades of …

… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the … scientist in Nikos Kyrpides’  Microbiome Data Science group. “What makes this study really stand out from previous …