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Development of PCR-based markers for the identification and detection of Lophodermella needle cast pathogens on Pinus contorta var. latifolia and P. flexilis
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Understanding Wildfire Recovery, Starting in Soil
… a wildfire. The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future plants and trees to … FTICR-MS analyses were performed under the Facilities Integrating Collaborations for User Science (FICUS) …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, more and more … that play key roles in cycling nutrients such as carbon, nitrogen and sulfur are themselves regulated by viruses in … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science …
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Rex Malmstrom
… and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … Ph.D. in Marine Biology/Biochemistry, University of Delaware BA in … D. et al. 2016. SAR11 bacteria linked to ocean anoxia and nitrogen loss. Nature 536 (7615), 179 Hatzenpichler, R. et …
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Coevolution of the Ess1-CTD axis in polar fungi suggests a role for phase separation in cold tolerance
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among … metabolism affects the biogeochemical cycling of carbon, nitrogen, and other elements, better understanding the …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … max ) also has the advantage of reducing the need for nitrogen fertilizer. These impressive environmental and … Glycine max on Phytozome …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm microbial diversity is wilder than ever. Imagine researchers exploring a dark room with a flashlight, only able to clearly … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each parent. Having three or more genome copies from additional parents or …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at …
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Ian Blaby
… Since 2019 Dr. Blaby heads the DNA synthesis platform at the Joint Genome Institute, where he leads three groups focused on HTP DNA … Ian Blaby on Google Scholar Grosjean et al ., A hemoprotein with a zinc-mirror heme site ties heme availability to … 10, 672-680. 2014 Blaby, et. al., Systems-level analysis of nitrogen starvation–induced modifications of carbon …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR … example, SIP experiments can show how soil microbes cycle nitrogen and carbon, or how freshwater ecosystems process … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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