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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge … and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and … are derived from isolates and single cells. This effort uncovers novel genes, protein families, and pathways, …
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Partnerships: Myco-Ed
The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based Undergraduate Research … DNA is extracted from samples, which is then sent to the JGI for genome sequencing, assembly and annotation. … The … and distribution of fungal genome datasets. It includes JGI-sequenced and publicly available datasets encompassing a …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … speciation events within existing species. Within the JGI’s production pipeline, ANI is used to ascertain the … control within IMG. While ANI is integrated within IMG, ani.jgi.doe.gov serves the current data. … The mission of the …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Metagenome Program
… high-throughput sequencing of microbial communities to uncover the complex interactions and functions that shape … viral populations. Enabling microbiome data science:  The JGI supports microbiome data science by enabling comparative … analysis through the IMG/M platform. Further, the JGI partners with the National Microbiome Data Collaborative …
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A cryptic third active site in cyanophycin synthetase creates primers for polymerization
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Declines in ice cover are accompanied by light limitation responses and community change in freshwater diatoms
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Metatranscriptomic Sequencing of Winter and Spring Planktonic Communities from Lake Erie, a Laurentian Great Lake
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A large sequenced mutant library – valuable reverse genetic resource that covers 98% of sorghum genes
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Metatranscriptomic analysis reveals dissimilarity in viral community activity between an ice-free and ice-covered winter in Lake Erie.
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Plant-Microbial Interactions Group
… 10.1371/journal.pbio.2002860 … Postdocs: Margot Bezrutczyk (JGI Postdoc) Lamprinos Frantzeskakis (JGI Postdoc) Interns: Katsuma Yonehara (Tokyo University) … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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