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Widespread natural variation of DNA methylation within angiosperms
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Anaerobic gut fungi are an untapped reservoir of natural products
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Pathway and Gene Discovery from Natural Hosts and Organisms
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Genome-reconstruction for eukaryotes from complex natural microbial communities
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Multi-chassis engineering for heterologous production of microbial natural products
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Cell-free synthetic biology for natural product biosynthesis and discovery
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Exploring and expanding the natural chemical space of bacterial diterpenes
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership role in providing genome science capabilities to support BER's mission of … the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA …
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Simon Roux
… in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development … ecogenomics. For this role, Dr. Roux can rely on more than 10 years of expertise in the fields of virus ecology and … learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria. PLoS Biology …
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DOE Metrics
… % Goal   FY 2025 Total   700.0 1,144.186 163% 8,585 8,640 100.6% Q1 2025 175 190.304 109% 2,164 2,136 98.7% Q2 2025 175 152.100 87% 2,117 2,112 … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), … UC Merced Senior Assistant Dean and CFO of the School of Natural Sciences Ernie Costello beamed as he spoke of what … working with Elizabeth Dumont , Dean of the School of Natural Sciences, to make sure that they provide the …
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Mapping the Earth’s Hidden Fungal Kingdom
… Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program … adequately capture the vast nature of fungal diversity. Examining databases like MycoCosm , the JGI’s online fungal … and yeasts, outnumber their ancient relatives by nearly 10 to one in sequenced collections. Yet the early-diverging …
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