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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field studies related … first sampled the area in summer 2016.  She described the microbial diversity patterns of Puerto Nuevo’s coastal … and Higher Education at Ensenada (CICESE) in her first microbial ecology paper in the journal PLoS One . “Puerto …
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A 34K SNP genotyping array for Populus trichocarpa: Design, application to the study of natural populations and transferability to other Populus species
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Genome‐Wide Association Study Identifies Candidate Loci Underlying Agronomic Traits in a Middle American Diversity Panel of Common Bean
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Association of functionally significant Melanocortin-4 but not Melanocortin-3 receptor mutations with severe adult obesity in a large North American case–control study
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Help from Citrus’ Bitter, Hardier Cousin
… to disease-resistance that could prove fruitful for saving Citrus from greening disease. You’ve probably never … this plant, native to China and now disseminated around the globe, often as a rootstock for  Citrus , appeals in other … JGI collaborator, are senior authors of the  recent study published in  The Plant Journal.  this study included …
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A Mentor’s Perspective on Training the Next Generation
Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab experience and contribute to ongoing projects. In one …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and biogeochemical cycles…. … at Colorado State University have many questions about the microbial communities deep underground, and before the …
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Uncovering Novel Genomes from Earth’s Microbiomes
… for multiple applications.       Despite advances in sequencing technologies and computational methods in the … have uncovered genomes for just a small fraction of Earth’s microbial diversity. Because most microbes cannot be … Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the environmental …
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Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who … and management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and … has changed our understanding of the microbiome and the microbial sciences field. Roux will be recognized at the …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse … issue of Nature Microbiology , they mined the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained … publicly available metagenome data provided by the other study co-authors, and reconstructed from these 10 …
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A sorghum genome-wide association study (GWAS) identifies a WRKY transcription factor as a candidate gene underlying sugarcane aphid (Melanaphis sacchari) resistance
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