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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help … (Berkeley Lab). Their findings were described in a recent Nature Communications paper . The work was partly enabled by … on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled a mycobiome culture …
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A 34K SNP genotyping array for Populus trichocarpa: Design, application to the study of natural populations and transferability to other Populus species
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Natural Variation in Lignin and Pectin Biosynthesis-Related Genes in Switchgrass (Panicum virgatum L.) and Association of SNP Variants with Dry Matter Traits
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Altered Expression of Two Small Secreted Proteins (ssp4 and ssp6) Affects the Degradation of a Natural Lignocellulosic Substrate by Pleurotus ostreatus
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David Goodstein
With a background in experimental and computational surface physics, Dr. … in support of JGI’s contributions to the Human Genome Project, he began developing larger comparative genomic … of Brachypodium hybridum and its diploid progenitors. Nature Communications 11, 1. Gordon et al., 2017.  Extensive …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy Spencer Chair in Genomics at the … after the JGI was established to work on the Human Genome Project in 1997. She was a group lead at Stanford Human … publications that Grimwood contributed to include: A 2021 Nature paper announcing a high-quality reference sequence of …
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Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization
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Single Nucleotide Polymorphism Charting of P. patens Reveals Accumulation of Somatic Mutations During in vitro Culture on the Scale of Natural Variation by Selfing
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in … Group. In an article published November 25, 2021 in Nature Methods , JGI researchers led by co-first authors Leo … Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We noticed a few years ago that …
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10 From JGI on the 2019 Highly Cited Researchers List
… their 2019 list of Highly Cited Researchers , which includes 10 affiliated with the JGI . The 2019 list focused … of 21 fields appear on the 2019 list. Congratulations to: Project Manager Kerrie Barry, Cross-Field Category Fungal … production to agricultural plant pathogens. Reported in Nature Genetics, the work is part of a long-term project to …
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An Integrated Dataset to Understand Ecosystem Interaction
… yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their … (LANL), and DE-AC05-76RL01830 (PNNL). … BioScales project on JGI Genomes Online Database … BioScales project on National Microbiome Data Collective … …
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Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
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