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Open Frameworks Training the Next Generation of Scientists
… experiments and data analysis. Starting with isolating and identifying fungi in the environment, students can prepare … for sequencing and analysis at the JGI to help produce novel fungal genomes. They manually curate data to connect … readily available via the KBase platform. This effort grew from a  modularized training program with the aim for future …
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Sodalis ligni Strain 159R Isolated from an Anaerobic Lignin-Degrading Consortium
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at … in CRISPR sequences to target the virus and release attack enzymes in the form of Cas enzymes to cut the DNA and disable the virus. In Science , a … DE-AC02-05CH11231. The work was supported in part by grants from the Paul Allen Frontiers Group, the National Science …
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Evolutionary Relationships of Wild Hominids Recapitulated by Gut Microbial Communities
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The Evolution of Host Specialization in the Vertebrate Gut Symbiont Lactobacillus reuteri
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Methanogenesis and Salt Tolerance Genes of a Novel Halophilic Methanosarcinaceae Metagenome-Assembled Genome from a Former Solar Saltern
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Novel Hydrophobins from Trichoderma Define a New Hydrophobin Subclass: Protein Properties, Evolution, Regulation and Processing
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Genomics of wood-degrading fungi
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Metabolic Modeling of Fungi
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those researchers send their samples in from afar, without ever hearing much about the sequencing …
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Division of labor in honey bee gut microbiota for plant polysaccharide digestion
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Early-life development of the gut virome and plasmidome: A longitudinal study in cesarean-born infants
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