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Streamlining Regulon Identification in Bacteria
… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … responses and cellular differentiation. The tough part is identifying the set of genes associated with any particular … and sigma factors. However, currently the process for identifying the particular regulon and target genes …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … (Berkeley Lab) to develop a process for more easily identifying cells of interest in a complex environmental … probe and was able to amplify the Vis6 group, which accounted for less than one percent of the sequences from a …
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Natural Prodcast Episode 12: Nadine Ziemert
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … about natural products and the science and scientists of secondary metabolism. Welcome back. This will be episode … Salinispora at Scripps Institution of Oceanography, her accidental entry into data analysis, the evolution of …
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The role of zinc in the adaptive evolution of polar phytoplankton
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a … a Genome Insider podcast minisode.)  In 2016, the JGI accepted a proposal from Sebastien Duplessis of the French … Phakopsora pachyrhizi , a major pathogen of soybean that causes ASR.  “I love working with these guys,” said …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … sequence data, was absolutely critical for the success of this effort and so was the acknowledgement of their … RNA viruses is just the beginning. “I often say that just identifying a sequence as viral is not even half the story.” …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have revisited a … JGI and the HudsonAlpha Institute for Biotechnology; Phil McClean of North Dakota State University; Dan Rokhsar of the … assembled a 473-million basepair genome of the common bean, identifying genes related to disease-resistance, flowering …
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From Competition to Cooperation
Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The … role in soil carbon storage. Summary There are three types of fungal saprotrophs in the forest. White rot can break … which degrade plant detritus. Despite the different modes of nutrition, many of these soil fungi have independently …
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The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation
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Influence of the polar light cycle on seasonal dynamics of an Antarctic lake microbial community
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JGI User Executive Committee Expands
… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute … Oslo, Aaron Robinson of Los Alamos National Laboratory, Rebecca Smith of the University of Wisconsin, Maggie Sogin of … sustainability challenges. She’s worked with the JGI on poplar and sorghum projects, specifically for generating …
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Metagenomes, Metatranscriptomes, and Metagenome-Assembled Genomes from Chesapeake and Delaware Bay (USA) Water Samples
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