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Optimized CRISPR Interference System for Investigating Pseudomonas alloputida Genes Involved in Rhizosphere Microbiome Assembly
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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DAS Tool for Genome Reconstruction from Metagenomes
… been utilizing metagenomics as a way to study a collection of hard-to-culture microbes, but the efficacy of this … benefit from the ETOP program, as tools such as this can help advance genome-centric analyses. DAS Tool will … members and their genome-encoded metabolic capabilities and interactions. Supported by JGI’s ETOP, this new tool will …
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Eelgrass Proves to Be Much Younger Than We Thought
… less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … when and how eelgrass adapted and evolved throughout its history. Their research, published in  August 2023 in  … climate. Knowing more about how eelgrass evolved can help inform conservation efforts for at-risk populations. …
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history
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Simon Roux
… the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … of new experimental approaches to link viruses to their host(s), collaboration with JGI users for analyzing viral … foundational knowledge of viral diversity and virus-host interactions in microbial systems. Through a 2021 DOE Early …
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Special Initiatives & Programs
… ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If “BERSS” is … with grants funded by DOE-BER requiring support from the JGI may  submit proposals here . Investigators … performs sequencing, metabolomics and synthesis on behalf of the U.S. Department of Energy Bioenergy Research …
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Genetic and Functional Diversity Help Explain Pathogenic, Weakly Pathogenic, and Commensal Lifestyles in the Genus Xanthomonas
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Data Policy
… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … the need to have a limited and time-sensitive protection of certain types of data to support their use by those generating data. The … is granted to proposal PIs, Co-PIs, and collaborators of any given proposal. Third parties (often referred to as …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their base are … is displacing these important cold-water communities of algae with warm-adapted ones, a trend that threatens to … photosynthesizing organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for …
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Virocell Necromass Provides Limited Plant Nitrogen and Elicits Rhizosphere Metabolites That Affect Phage Dynamics.
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