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Supercharging SIP in the Fungal Hyphosphere
… a commonly-used process for studying microbial communities, with results published in the  November 2022 issue … Because microorganisms live in complex communities, like within soils or the gut, they are difficult to study … up the pace at which researchers can extract the bioenergy secrets they hold. HT-SIP is a capability available to …
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A Collaboration to Improve Plant Genome Annotations Across Species
… the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which … set of RNA molecules transcribed from all the genes within a cell or tissue at a specific time or under specific … included datasets from two species, one of which is sweet sorghum Rio from a JGI Community Science Program project and …
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JGI User Executive Committee Expands
… and Kevin Solomon of the University of Delaware. Along with the existing UEC members, their areas of study span the … development. Maurice is a fungal evolutionary ecologist with interests in understanding which processes change … challenges. She’s worked with the JGI on poplar and sorghum projects, specifically for generating libraries of …
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JGI on the 2020 Highly Cited Researchers List
… candidate bioenergy feedstock crops such as sugarcane and sorghum.     …
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JGI & KBase at PAG XXVII
… (KBase) will be at Booth 509. Stop by and chat with representatives from KBase and the JGI about … science opportunities. Learn how to apply for a project with the JGI Community Science Program, and how you can use … Approach to Discovering Promoters Regulating Poplar Drought Response 7:27 PM Highlights from Genome of …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… and recaps of all three keynote talks follow, starting with Bruce Hungate. Other videos of talks from the JGI … like poetry.” True to the introduction, Hungate spoke with real enthusiasm, even delight. He qualified his talk … She added that this term is good to keep in mind when dealing with metabolites that are redox-active — such a …
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DAP-seq Drives Robust Mapping of Gene Regulation
… limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification Sequencing … of unique cell types in plants such as  Arabidopsis and sorghum. Together, these datasets allow scientists to … between which TF is in charge,” Greenblum said, citing drought tolerance in grasses as an example, where these …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant roots. Plants provide photosynthesized carbon, … mycorrhizal symbiosis in other bioenergy grasses, like sorghum and switchgrass. We’re optimizing systems now, so …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… at Lawrence Berkeley National Laboratory, have collaborated with global researchers on projects related to understanding … of the JGI’s  Microbiome Data Science , leads one project with JGI colleagues Antonio Camargo and Simon Roux. Kyrpides … community. Kyrpides’ project, “ Advanced analytics for uncovering virus dynamics and functional potential ," is …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the … The genomic landscape of molecular responses to natural drought stress in Panicum hallii . Nature Communications 9: …
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Busting the Unbreakable Lignin
… anaerobic fungi could be used to effectively modify lignin without oxygen and make use of it, it would change the … is well-established: Across all life forms and with little exception, organisms have figured out how to … cultivated anaerobic fungi (Neocallimastix californiae) on sorghum, switchgrass and poplar, then monitored changes to …
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JGI Accepts 17 Proposals for Community Science Program
… Monitoring Inter-Organism Interactions Within Ecosystems Latest portfolio of approved proposals … and enhance the rubber biosynthesis pathway in guayale, a drought tolerant shrub. Melissa Roth of the University of … how chronic warming is altering how microbes interact with their environment, potentially accelerating soil carbon …
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