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Marine Microbe Contains Multitudes
… cells of the uncultivated SAR324. The constellation of data gave the team unprecedented resolution to study the … also processed using the JGI-developed software suite, BBTools , and relying on the JGI Integrated Microbial Genomes … Oceanography: Research and Education. … SAR324 on IMG/M Data portal … BBTools is a suite of fast, multithreaded …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… his team then linked those species-level observations with data on microalgal communities across different ocean … from pole to pole, using metatranscriptome and metagenome data from the JGI. With multiple threads of evidence showing … The JGI Algal Program makes genomes and multi-omics data from JGI CSP projects publicly available at the …
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PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens
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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
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UC Merced Interns Reflect on Their JGI Summer Projects
… worked on ranged far and wide — from implementing new data visualization tools, to using natural language processing techniques to … a fruitful experience for mentors and students alike. Tools like Slack, Google Docs, and GitHub enabled virtual …
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Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis
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Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System
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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
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SoyCSN: Soybean context‐specific network analysis and prediction based on tissue‐specific transcriptome data
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The Physcomitrella patens gene atlas project: large‐scale RNA‐seq based expression data
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Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato
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Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger
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