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… cells of the uncultivated SAR324. The constellation of data gave the team unprecedented resolution to study the … also processed using the JGI-developed software suite, BBTools , and relying on the JGI Integrated Microbial Genomes … Oceanography: Research and Education. … SAR324 on IMG/M Data portal … BBTools is a suite of fast, multithreaded …

Sphagnome data would enable researchers’ insights on their potential … Environments) project, assessing how northern peatland ecosystems respond to increases in temperature and elevated … S. fallax is already available on the  JGI plant portal Phytozome , and the S. magellanicum genome is currently …

… plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  recently described in  Nature … created by researchers under the direction of Microbiome Data Science Group Lead Nikos Kyrpides at the U.S. … for identifying viruses and plasmids. Until now, most other tools have focused on identifying only specific plasmids or …

… so starting from some of the enzymes that we had the most data on and knew the most about, working with my … You can really design your experiments in a way that’s data rich, and you can really just learn so much, which then … with. DAN UDWARY: Yeah. ALISON NARAYAN: And there are other tools that I think are really useful, that again are set up …

… quality genome assemblies for all three grasses. With these datasets, researchers made a pan-genome containing four  B. … B. hybridum are all available on the JGI’s plant portal  Phytozome v13 . Researchers from the following institutions … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

The PhycoCosm data portal allows anyone to freely investigate the genes of … proteins. PhycoCosm’s built-in connection to the DOE Systems Biology Knowledgebase (KBase) also allows … in algae. PhycoCosm joins other online data portals and tools created by JGI researchers, including the Integrated …

… high altitude! And a lot of us moved on to work in simpler systems, like bacteria, where we figure we can make more … learn how to make peptides, rationally. We’d find these tools, we’d understand them, and we’d apply them. And so, I … proteins interact with each other. There’s a lot of leading data from excellent groups about specific interaction …

… using these together along with all of our computational tools to really build out much more of an integrative … work. And I think as we understand more about regulatory systems that will also help us predict which hosts might be … heard me speak recently have heard me talk about the new data portal that we’re building. And I’ve been eager to …

GenBank File There are several easy-to-use open source tools for converting DNA sequence files into well-formed …

… worked on ranged far and wide — from implementing new data visualization tools, to using natural language processing techniques to … a fruitful experience for mentors and students alike. Tools like Slack, Google Docs, and GitHub enabled virtual …