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Getting to the Bottom of Fungal Functions Across Earth’s Forests
Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … RNA to understand gene expression, and developed new tools to map that soil RNA to fungal genomes.  The U.S. …
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Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
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IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata
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Individual genome assembly from complex community short-read metagenomic datasets
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… manage the growth, yield and climate resilience of algae — for potential use as biomass or in biomass conversion to … Biology article highlights how one microalga collected from water on the ice surface handles such fluctuations. P. … sequencing from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying … at UC Berkeley. Dr. Pennacchio received his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the genetic cause of a …
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The Structure of CcmP, a Tandem Bacterial Microcompartment Domain Protein from the β-Carboxysome, Forms a Subcompartment Within a Microcompartment
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MicroSyn: A user friendly tool for detection of microsynteny in a gene family
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Learning to Look
… answer the question, “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters … by scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … in the  Environmental Genomics group . Training the Search Tool Inoviruses are stealth agents that can enter and exit …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant … a condition known as polyploidy. The multiple copies arise from past genome duplication, which occurs in two basic …
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Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes
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Deconvolute individual genomes from metagenome sequences through short read clustering
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