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Natural Prodcast Episode 17: Cassandra Quave
… able to not only purchase their own HPLC to enable faster analysis of their plant extracts, but also establish their … familiar with GNPS as a tool, and using molecular network analysis, too, as an early step. That’s something that we do …
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Applying Viral Genomics Expertise to Understanding the Human Virome
CheckV , which assesses the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic … University. The CODCC aims to coordinate data acquisition, analysis, and visualization through a sustainable, …
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Virus-Microbe Interactions of Mud Island Mangroves
… worked with the JGI through a Community Science Program (CSP) proposal, and Rambo’s research builds on that. “The purpose of this CSP is to better understand methane cycling in mangrove wetlands in south Texas,” he explained. …
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Natural Prodcast Episode 4: Nancy Keller
Then you have to maybe improve some of your bioinformatic analysis. You don’t want to get clusters that are encoding …
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JGI announces 2024 New Investigator portfolio
… results could bring key insights into how our planet’s nutrient cycles are regulated, and the ways organisms can …
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Multi‐omic analyses of exogenous nutrient bag decomposition by the black morel Morchella importuna reveal sustained carbon acquisition and transferring
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JGI@25: Cow Rumen and the Early Days of Metagenomics
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Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
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Jeremy Schmutz
Institute and the collaborative projects funded through the CSP program. In addition to continuing to develop strategies … de novo plant assembly and the post-genome computational analysis at HudsonAlpha. … Jeremy Schmutz is the Plant … kingdom. Nucleic Acids Res . 51, 1–24.Lovell, JT et al. 2021. Genomic mechanisms of climate adaptation in polyploid …
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Digging into Microbial Ecosystems Deep Underground
… underpin so much of what we see on earth in terms of nutrient cycles and biogeochemical cycles…. Viruses play a pretty important role in the cycling of nutrients in these systems.” -Mike Wilkins, Colorado State …
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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JGI announces final round of 2022 Functional Genomics awardees
… genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that …
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