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Water aging and the quality of organic carbon sources drive niche partitioning of the active bathypelagic prokaryotic microbiome
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Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01
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Viral niche-partitioning: Comparative genomics of giant viruses across environmental gradients in a High Arctic freshwater-saltwater lake
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Tissue Cultivation, Preparation, and Extraction of High Molecular Weight DNA for Single-Molecule Genome Sequencing of Plant-Associated Fungi
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John Vogel
… techniques) and utilizing these resources to understand genome organization and regulation, abiotic stress … Sasse, et. al.J. 2019 Multilab EcoFAB study shows highly reproducible physiology and depletion of soil … Grass Brachypodium distachyon.  Nature. 463: 763-768 … 2018-present Member, EcoFAB steering committee 2014-present …
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Making a Lichen Together
For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … lichens. Studying the symbiosis by investigating a lichen’s genomes and transcriptomes could help inform efforts at … are dominant carbon and nitrogen fixers in alpine and high latitude ecosystems, deciphering their internal …
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JGI@25: From Life at the Extremes to Editing Genomes
… has resulted in several papers, including one in 2018 on the discovery of miniature CRISPR-associated … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron … Cell. 2019 Feb 21;73(4):727-737.e3. doi: 10.1016/j.molcel.2018.12.015. Harrington LB et al. Programmed DNA destruction …
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JGI Scientists Pen Genome Watch Articles
Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the  Nature   Reviews column all started with an email in 2018.  Tanja Woyke , who leads the  Microbial Program at the … opportunity for JGI to work on these, as it allows us to highlight hot topics in genomics.” And it makes sense to …
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Light-responsive expression atlas reveals the effects of light quality and intensity in Kalanchoë fedtschenkoi, a plant with crassulacean acid metabolism
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… said, the 1000 Fungal Genomes project, together with other CSP projects, had sequenced over 2,000 fungal genomes. The … winding road, this new influx of genomes opened a superhighway for the same route. “It was really amazing how the quality of the data improved thanks to that massive amount …
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High‐Throughput In Vitro Glycoside Hydrolase (HIGH) Screening for Enzyme Discovery
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High Potential for Biomass-Degrading Enzymes Revealed by Hot Spring Metagenomics
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