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Niche dimensions of a marine bacterium are identified using invasion studies in coastal seawater
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A plant host, Nicotiana benthamiana, enables the production and study of fungal lignin-degrading enzymes
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Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization
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Hydrazine Synthase, a Unique Phylomarker with Which To Study the Presence and Biodiversity of Anammox Bacteria
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent … Colorado State University researchers led a consortium to study river microbiomes. To understand the microbiology of … Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… diversity of large and giant viruses. While the microbes in a single drop of water could outnumber a small city’s … much less those considered large and giant. In a recent study  published in the journal  Nature , a team led by … Program . The team mined more than 8,500 publicly available metagenome datasets generated from sampling sites around the …
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Behind the Paper: Hot Springs Metagenomics
Adapting the graduate research experience amidst a global …
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Microbial Genomics & Metagenomics (MGM) Workshop
… has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on Microbial … Genomics and Metagenomics. Details: mgm.jgi.doe.gov   This highly hands-on workshop is designed to familiarize …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… complexity At first glance, the slightly murky waters in the tube look like a scoop of stormwater, complete with … described the morphological and genomic features of this giant filamentous bacterium, along with its life cycle. … at the Université des Antilles and a co-first author on the study, performed the 16S rRNA gene sequencing to identify …
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A Bioinformatician's Guide to Metagenomics
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… second fiddle to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate … nitrogen, a key ecosystem nutrient. The Impact This study is the first to dig into a forest floor ecosystem to … able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) …
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JGIota: Sequencing Shiitakes with David Hibbett
David Hibbett of Clark University fills us in on the kind of decay that makes shiitake mushrooms special. This week, he and 39 collaborators published a paper tracing how …
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