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Data Ecosystem
… users through a BER data ecosystem.  A data ecosystem is a connected resource where data from different organizations is discoverable and accessible. Linking the resources of … other and with their environment and help unravel these complexities  This ecosystem serves users better in the …
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A Grass Model to Help Improve Giant Miscanthus
… chromosomes of Miscanthus arose by ancient hybridization (polyploidy) and insights into the dynamics of gene … simpler (and smaller) models, Miscanthus has a large and complex genome whose evolutionary history and perennial … Understanding the evolution of polyploidy, and how genomes respond to extra chromosome and gene copies, will …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two … parents or duplication, also known as “polyploidy,” is common among flowering plants; at least once during their …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … hope JGI and other institutions continue to do this kind of projects.” The work also used resources of the  National …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As … I recently caught up with Karolina at the Plant and Animal Genomes, or PAG conference, when in-person meetings were … i.e. in January. She talked about her  Community Science Project proposal with JGI, in which she’s studying a special …
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Adopt-A-Genome
… In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the … (California State San Marcos) about how the Adopt-A-Genome project got started. Plus, Kalyani Maitra (California State Fresno) and two students, Angela and Mark Soghomonian share what it was like to take on one of these …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in … battle waged below the Earth’s surface is reconstructed by combining a study of microbial communities (metagenomics) … of countering multiple attempts at virus infections. Their genomes include short DNA sequences that code for CRISPR …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have … has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community … Hungate1000, a catalog of 410 rumen microbe genomes. The project relied upon resources from laboratories around the …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental data. …
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Tom Juenger
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Frontiers, Opportunities, and Challenges in Biochemical and Chemical Catalysis of CO2 Fixation
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Carboxysomal carbonic anhydrases: Structure and role in microbial CO2 fixation
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