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Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in Rhodosporidium toruloides
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A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism
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Oxic–anoxic cycling promotes coupling between complex carbon metabolism and denitrification in woodchip bioreactors
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JGI Announces 2025 New Investigator Portfolio
… Ian Gilman, Louis Graf, Yuxi Guo, Shaomei He, Vayu Hill- Maini, Forrest Lefler, Pok Man (Bob) Leung and Huang Li; … of biofuel-producing fungi, the effects of biochar on rhizosphere microbiomes, and the metabolic pathways of … plant interactions across unique ecosystems, from alpine soils to tropical glaciers.  Proposals are accepted …
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have successfully … Soil microorganisms play a critical role in sequestering carbon and mitigating greenhouse gas emissions, and … The work conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions … an untargeted metabolomic analysis directly from the rhizosphere in natural soil? A:  It depends on the soil. … typically use a measure of biomass, e.g. wet weight, total carbon analysis of the biomass, etc. Q:  If we have only the …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI … that infect organisms much smaller than humans, like bacteria, this power is not surprising at all.  In fact, … the planet’s oceans can exert great influence on earth’s carbon and nitrogen cycles. Currently one of the best ways …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… This year’s list features 6,900 researchers working in 21 fields.  Congratulations to the  2022 Highly Cited … selection of studies these busy bees contributed to:  Giant bacteria visible to the naked eye :  Natalia Ivanova and  … Group helped better-understand what the sulfur-oxidizing, carbon fixing bacterium was doing in the Guadeloupean …
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Construction of Viable Soil Defined Media Using Quantitative Metabolomics Analysis of Soil Metabolites
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Comparison of soil biosolarization with mesophilic and thermophilic solid digestates on soil microbial quantity and diversity
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A global soil plasmidome resource unveils functional and ecological roles of plasmids in soil microbiomes
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Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica
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