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Gene duplication and genetic innovation in cereal genomes
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The quantitative genetics of gene expression in Mimulus guttatus
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora … . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … of the National Academy of Sciences . Researchers applied multiple omics techniques to reconstruct and model the gene …
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Natural Prodcast Episode 4: Nancy Keller
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Welcome back to Natural … After I got my undergraduate degree, which was in general biology, I joined the Peace Corps. And when I was …
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The Surprising Structure of a Shrub Willow Sex Chromosome
A genetic architecture that is characteristic of the sex … — suggest that they are advantageous enough to have evolved multiple times independently. The researchers also found a …
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Natural Prodcast Episode 12: Nadine Ziemert
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … about natural products and the science and scientists of secondary metabolism. Welcome back. This will be episode … of it. So it wasn’t only chemistry or only biochemistry or genetics. It was also ecology. It was also evolution. It was …
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi again, and welcome to … that can’t live without their host. They have no extra genes hanging around, they still dedicate 20-30% of their …
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Natural Prodcast Episode 3: The Primer, Part 3
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there. This is Dan again, … and actually get to the DNA sequence – sequences for the genes that code for the proteins that produce secondary …
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JGI Portals
… constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial … community resource for comparative analysis and annotation of all publicly available genomes from three domains of … host taxonomy, conjugation potential, antibiotic resistance genes, and ecosystem information. … The IMG/VR database …
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … Laboratory (Berkeley Lab), and collaborators across multiple other research centers around the world. “We’ve … sequencing allows researchers to study the entire genetic makeup of these communities via whole genome …
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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … include exploration of the global diversity of alternative genetic codes (Science 2014), unearthing hundreds of … Sequencing a Myriad of Type Strains. PLoS Biology  12(8):e1001920 Ivanova N. et al. (2014) Stop Codon Reassignments in …
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A Complex Confection Decoded: Sugarcane Reference Genome
… most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … in  Nature by an international consortium. With the genetic code of sugarcane, researchers were able to map the … Many plants, sugarcane included, are polyploid and have multiple copies of chromosomes. Sugarcane accounts for 80% …
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