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… in Sorghum (EPICON) is a five-year, multi-institution project funded by the DOE Office of Biological and … and how these conditions impact the crop and its microbiome. For three consecutive years (2016-2018), … under three watering conditions, and then collected root, leaf and rhizosphere (soil surrounding the root) …

… have also harnessed CRAGE to create a plant-fertilizing microbiome. In work  reported in  Applied and Environmental Microbiology , the researchers engineered root bacteria  Pseudomonas  and Ralstonia with enzymes that … these engineered bacteria were used with the model plant  Arabidopsis,  the plants grew better than when they were …

… be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … How To Create an Annotated GenBank File … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …

… functional genome annotation, improves understanding of the role small molecules play in diverse biological … JGI Metabolomics Platform delivers rich metabolite profiles from diverse biological and environmental samples using … molecular profiles are generated for metabolites extracted from a variety of experimental samples, including organisms …

… the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research … This is due to the overreliance on a few species like Arabidopsis or rice as homology models for computational … We looked at the plant’s response in the aboveground and root tissues. The striking thing we found was related to …

… attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the Florida Everglades to … that the project had already received enthusiastic support from the JGI Director, Nigel Mouncey. Jonathan credits his … training for the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) portal for their sample analysis.  The …

… recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and … team of researchers collected soil samples from a wildfire that burned at the Colorado-Wyoming border, … DOE Office of Science National User Facilities in a single project. … This work was supported through a USDA NIFA award …

… entities that seek to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are … software was created by researchers under the direction of Microbiome Data Science Group Lead Nikos Kyrpides at the … used computational resources from the Exascale Computing Project (17-SC-20-SC), a collaborative effort of the U.S. …

… challenges. Congratulations to Jennifer Doudna of the University of California (UC), Berkeley and Lawrence … For the past few years they have partnered with JGI’s Microbiome Data Science group led by Nikos Kyrpides , mining … collection of publicly accessible metagenomic datasets from a wide variety of ecosystems around the world, …