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Nikos Kyrpides
… (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program since 2011. Prior to joining the DOE Joint Genome Institute, Dr. …
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Rex Malmstrom
Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth … cell sorting and non-standard molecular protocols.  Finally, his team utilizes new technologies, e.g. acoustic … Boston University ( magna cum laude ) … Serrano et al. 2024.  Spatial co-transcriptomics reveals discrete stages of …
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I-Min (Amy) Chen
… of Application Development Systems at Gene Logic, Inc. from 1997 to 2005, responsible for the development of key … rich annotations and metadata. Nucleic acids research Jan 2024 Chen IA, Markowitz V, Szeto E, Palaniappan K, and Chu … Data Analysis System in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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Natural Prodcast Episode 5: Brad Moore
… pairs. It was not linear, like Streptomyces , but circular. 10% of the genome encoded natural product pathways. Dan: … Brad: Yeah, at that time, that was new, right? Like, my god 10% of the genome makes small molecules that have, you know, … of changed over the years. And I think maybe over the last 10 years, I’ve really become a fan of having postdocs, and …
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Jeremy Schmutz
… with the DOE Joint Genome Institute dates back to 1997, when he was working for the Stanford Human Genome … co-led the team that finished the DOE human chromosomes 5, 16, and 19. Following the completion of the human genome … IL … Healey, A.L., Garsmeur, O., Lovell, J.T. et al.  2024.The complex polyploid genome architecture of sugarcane. …
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Scaling Up Existing Skill Sets
… to functional genomics. Hear from five of the Summer 2019 interns, who briefly shared their experiences below. … and truly an inspiration to me. Name: Brenda Yu Class Year: 1st year graduate student at Stanford University in the … to get a single line of code working and get the desired final output. Being successful in my computational efforts …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
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Matt Blow
… and to understand genome function in bacteria. Since 2016, he has been the lead of the User Support Analysis group. … UK and Lawrence Berkeley National Lab … Bowers et al. 2024. scMicrobe PTA: Near Complete Genomes from Single Bacterial Cells bioRxiv , 2024.01. 30.577819 2. Dicenzo et al. 2022. DNA Methylation …
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Emiley Eloe-Fadrosh
Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial ecology and … She stepped into the Metagenome Program Lead position in 2017. She also leads the DOE’s multi-lab National Microbiome … for stable isotope probing metagenomics. mSystems . 8(4):e0128022. Kelliher JM, et al. 2023. Cohort-based learning for …
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Ian Blaby
Since 2019 Dr. Blaby heads the DNA synthesis platform at the Joint … to carbon metabolism in cyanobacteria Nature Communications 15(1) 3167. 2024 Simirenko et al ., gRNA-SeqRET: a universal tool for …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… challenges.   The Human Genome Project began in 1990 when the U.S. Department of Energy (DOE) partnered with … Livermore National Laboratory had teams studying Chromosome 19, which contains about 2% of the human genome. They were … 12% of the total human genome, which itself was finally deemed complete on April 1, 2022. After completing …
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Webinar: Introducing the BioSANS capability
… (CSMB) at Oak Ridge National Laboratory.   On March 2, 2021, the Environmental Molecular Sciences Laboratory hosted a …
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