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The Earth BioGenome Project 2020: Starting the clock
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one … data repositories over its now 20-plus-year history. In 2019, the countdown has begun to the June dedication event of … Maxon, Biosciences Associate Laboratory Director, of the 100-page document with over 200 actionable milestones. JGI …
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The More the Merrier: Making the Case for Plant Pan-genomes
… with a maternal  B. distachyon parent (D plastotype) some 1.4 million years ago (Mya), while the S plastotype was a more recent event (0.14 Mya) with a maternal  B. stacei parent. The analysis also … and recent  B. hybridum accessions produced infertile F1 descendants (first offspring of the parents), posing the …
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Better Genome Editing for Bioenergy
… and choose only the most reliable sgRNAs for their final set. Tool in hand, the team was ready to test what … genes were essential to  Y. lipolytica . They identified 1,377, or 17.5 percent, of  Y. lipolytica ’s genes to be required for … Institute grant  CSP-503076 (IW, HA, and MB) and NSF  1706545 (IW). HA and JW were supported by the Office of …
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Mindfully Moving JGI
… to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were silent. Twenty years after the JGI united the … to mindfully declutter. Earlier this year, the third and final annual cleanup day filled nearly 24 speedpaks, and …
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First Monoploid Reference Sequence of Sugarcane
… modern sugarcane cultivars are hybrids, each with more than 100 chromosomes; assembling a sugarcane genome is incredibly complex given its estimated size of 10 billion bases (more than three times the size of the … to the gene-rich part of sorghum used as a reference. The final sugarcane sequence generated is 382 Mb; 25,316 …
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A Plant Root Atlas for Tracking Developmental Trajectories
… patterns in the  Arabidopsis root, profiling nearly 100,000 single root cells and combining the information with … research by then-Biosciences scientist Diane Dickel in 2017. In 2019, plant single-cell methods were officially called out as …
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Uncovering Novel Genomes from Earth’s Microbiomes
… a wide range of research fields. A public repository of 52,515 microbial draft genomes generated from environmental … Using this massive dataset, Nayfach clustered the MAGs into 18,000 candidate species groups, 70% of which were novel … BGCs in IMG/ABC (Atlas of Biosynthetic Gene Clusters) by 31%. ( Listen to this JGI Natural Prodcast episode on genome …
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SPRUCE-ing Up Science
… When Lawrence embarked on his PhD program at UC Merced in 2013, this field was just beginning to develop and expand into … cohort is required to participate in both a midterm and a final round of presentations.  “That really helped build my … his PhD dissertation defense presentations and beyond. In 2018, a friend of his wife’s passed along an open postdoc …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… led the team to identify a gene called Less Shattering 1 (SvLes1); gene editing studies led by co-first author Pu Huang … green millet plant genomes were generated, though the final analyses focused on 598 individuals. Schmutz and his … About The Donald Danforth Plant Science Center: Founded in 1998, the  Donald Danforth Plant Science Center  is a …
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Nigel Mouncey
… Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its 27-year history. He has a … AAAS Fellow (2024) Society for Industrial Microbiology and Biotechnology … Society for Industrial Microbiology and Biotechnology (2021) 2016 World Bio Markets Bio-based Business Person of the …
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The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
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