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JGI Portals
… for the broader scientific community and require constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes … over 15 million viral genomes and fragments, enriched with functional annotation, taxonomic classification, and …
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Simon Roux
… of the Metagenome Program. His responsibilities include the development of novel computational tools to identify virus sequences, the design of new experimental approaches to … 12, 3076. Roux et al., 2018. Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature …
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Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi
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Development of platforms for functional characterization and production of phenazines using a multi-chassis approach via CRAGE
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Cynipid wasps systematically reprogram host metabolism and restructure cell walls in developing galls
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Development of a Recombineering System for the Acetogen Eubacterium limosum with Cas9 Counterselection for Markerless Genome Engineering
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Development of genetic tools for heterologous protein expression in a pentose‐utilizing environmental isolate of Pseudomonas putida
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Rhizosphere and detritusphere habitats modulate expression of soil N-cycling genes during plant development
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Scaling Up Existing Skill Sets
Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship … experience working intermediately between academia and industry, which is something I didn’t even know existed before. … my Ph.D. What is/has been one of your favorite things about your JGI internship?  Doing the JGI internship has …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the … critical for roles including plant growth and cell wall development.  M. polymorpha is also among one of the plants … Summary As the planet has changed, so have plants. Curious about their ability to adapt to changing environments, …
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and … Studying bacteria and archaea, including those associated with microeukaryotes, enhances our understanding of … diversification and microbial diversity. Learn more about this work and further details on our Genomic …
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Model Fern Reveals Insight into DNA Thievery in Ferns
Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and … well as the evolution of seed plants, the fern’s distant cousin. Ceratopteris richardii, or C-fern, specifically has … genes. And gene family analysis showed that genes directing development of reproductive structures in seed plants were …
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