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The complete mitochondrial genome of the conifer needle endophyte, Phialocephala scopiformis DAOMC 229536 confirms evolutionary division within the fungal Phialocephala fortinii s.l. – Acephala appalanata species complex
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A sorghum pangenome reference improves global crop trait discovery
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Frederik Schulz
… Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His research … program on agnostic pathogen detection and surveillance in complex samples. … B.Sc. Biochemistry, University of Applied Sciences Mannheim (Germany) M.Sc. Molecular …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion Episode” … Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up … organisms we’re finding– at least by looking at their full genomes — are really not like anything that’s been …
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Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples
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Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi
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Oxic–anoxic cycling promotes coupling between complex carbon metabolism and denitrification in woodchip bioreactors
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … the University of Texas at Austin produced a high-quality reference sequence of the complex switchgrass genome. The reference genome built off … P. virgatum on Phytozome …
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The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory.
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users … other and with their environment and help unravel these complexities  This ecosystem serves users better in the … Through its partnership with NERSC and the DOE Energy Sciences Network …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global … dirt-to-shirt value chain. Assembling cotton’s large and complex genome means being selective in choosing which team … research. “What I have told our growers is, ‘Think of these reference genomes as a surgeon’s knowledge, and of gene …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress … developing new experimental capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – …
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