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John Vogel
… techniques) and utilizing these resources to understand genome organization and regulation, abiotic stress … Brachypodium. Genetics, 223 (2), art. no. iyac146 DOI: 10.1093/genetics/iyac146 Gordon, et. al. 2020 Gradual … Genetics and Genomics of Brachypodium. 2016 Vogel, J.P. Ed., Springer, Switzerland. ISBN: …
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User Advisory Committees
All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … as a liaison to the user community and the broader scientific community, and promotes communication and … and strategic objectives of the microbial and metagenome programs. The committee serves as the program's key …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located …
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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the founding Associate Director … group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer (2013-2016). Dr. Rokhsar joined the faculty of University of …
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How to Submit Sequencing Samples
… demonstrate the importance of proper nucleic acid quantification in our Illumina and PacBio sequencing workflows … Protocol JGI’s Small RNA Sample QC Protocol DNA Extraction 101 : tips, kits, and protocols (from PacBio) Guidance for … Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? …
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The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata
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The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… [DNA Synthesis Science Head] Yasuo [Yoshikuni] gave back in 2016.” Alper’s first approved JGI proposal came through the … the proposals. The proposer of approved proposals are notified and a contract is drawn up to begin the work. Q:  … the full library.   … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a leadership … the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA …
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A Grass Model to Help Improve Giant Miscanthus
… of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass … Miscanthus sinensis has been published. Analysis of the genome sequence also provides insights into how the multiple … times and in different parts of the plant, the team identified genes that may regulate nutrient transport to and …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … we also hoped to use this unique opportunity to quantify how transitions to higher ploidy could be generating … (in this case, a plant’s complete genetic makeup) and 10 common gardens. We discovered that 8X populations have …
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Tour the IGB
Take a virtual tour of the IGB, home of the DOE Joint Genome Institute. To navigate virtual tours of each floor, …
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