Skip to main content
Logo
Logo Logo

Header Utility Nav

  • Mission
  • Science Programs
  • Who We Are
  • Data Policy & Support
  • Contact

Main navigation

  • Analyze Data
    • JGI Portals
      All the data we generate are publicly available
    • Data Ecosystem
      Meet our data partners
    • How to Use Our Systems
      Learn more about navigating JGI portals
  • Work With Us
    • User Programs
      Learn more about our proposal calls
    • Offerings & Capabilities
      Learn how the JGI can advance your science
    • Educational Partnerships
      Empowering the next generation of researchers
    • Events
      JGI-hosted meetings, seminars, workshops and more
  • User Stories
    • Science Stories
      Read about JGI-enabled user research
    • Genome Insider
      Our podcast features users discovering the expertise encoded in our environment
    • Announcements
      The latest news on new users, projects and JGI scientists
    • Publications
      Search user publications by year, program and proposal type
    • Approved Proposals
      Find a list of previously-accepted proposals

Main navigation

  • Analyze Data
    • Menu
    • JGI Portals
      All the data we generate are publicly available
    • Data Ecosystem
      Meet our data partners
    • How to Use Our Systems
      Learn more about navigating JGI portals
  • Work With Us
    • Menu
    • User Programs
      Learn more about our proposal calls
      • CSP Overview
      • FICUS Overview
      • Special Initiatives & Programs
      • Partnerships Development Team
    • Offerings & Capabilities
      Learn how the JGI can advance your science
      • Products
      • Sequencing
      • Synthesis
      • Metabolomics
    • Educational Partnerships
      Empowering the next generation of researchers
    • Events
      JGI-hosted meetings, seminars, workshops and more
  • User Stories
    • Menu
    • Science Stories
      Read about JGI-enabled user research
    • Genome Insider
      Our podcast features users discovering the expertise encoded in our environment
    • Announcements
      The latest news on new users, projects and JGI scientists
    • Publications
      Search user publications by year, program and proposal type
    • Approved Proposals
      Find a list of previously-accepted proposals

Header Utility Nav

  • Mission
  • Science Programs
    • Menu
    • DNA Synthesis Program
    • Fungal & Algal Program
    • Metabolomics Program
    • Metagenome Program
    • Microbial Program
    • Plant Program
    • Secondary Metabolites Program
  • Who We Are
    • Menu
    • Leadership
    • Program & Platform Leads
      • Environmental Genomics
      • IMG Group
      • Metabolomics Technology
      • Micro-Scale Applications
      • Microbiome Data Science
      • New Lineages of Life
      • Plant Microbial Interactions
      • Single Cell Research
      • Strain Engineering
      • Synthetic Biology Informatics
      • Synthetic Biology Lab
      • User Support Analysis
      • Viral Genomics Group
    • Committees
      • JGI User Executive Committee
      • Scientific Advisory Committee
      • DNA Synthesis Science User Advisory Committee
      • Fungal & Algal Program User Advisory Committee
      • Informatics Advisory Committee
      • Plant Program User Advisory Committee
      • Prokaryote Program User Advisory Committee
      • Secondary Metabolites Advisory Committee
  • Data Policy & Support
    • Menu
    • Project Management Office
    • Data Policy
  • Contact

Breadcrumb

  1. Home
  2. Search

Search

Results


Impact of single-cell genomics and metagenomics on the emerging view of extremophile “microbial dark matter”
Learn more
Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
Learn more
The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
Learn more
The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation
Learn more
Metagenomes and Metagenome-Assembled Genomes from Microbial Communities Fermenting Ultrafiltered Milk Permeate
Learn more
Mindfully Moving JGI
… the process of moving 250 people and their equipment from 4 single-story buildings to a new 4-story building 20 miles away in another city and county … of it is going everywhere except landfill.” At each phase of the ongoing move process to the IGB, speedpaks are …
Learn more
Dan Rokhsar
… and evolutionary analysis of over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics …
Learn more
Secondary Metabolites Program
… factors and determine their binding sites across multiple genomes. Computational prediction of heterologous …
Learn more
An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … the genomes of these viruses and associate them with their microbial hosts. However, assembling viral genomes from … based on open ocean samples. CheckV identified a total of 44,652 complete or near-complete viral genomes across both …
Learn more
JGI@25: Expanding Metagenomics to Capture Viral Diversity
… because they often need unique conditions and a specific microbial host to replicate. Sequencing genetic material … Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along … world, including 3,908 isolate reference DNA viruses and 264,413 computationally identified viral contigs. Since then, …
Learn more
The Power of One, Amplified
… that were missed within paired metagenome assembled genomes (MAGs), and that dominant populations varied with … of bioinformatics tools for  extracting snippets of microbial genomes directly from environmental sequence data, … This work was also sponsored by NSF grants DEB-1441717, OCE-1335810, and OIA-1826734 to RS. …
Learn more
Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea
Learn more

Pagination

  • First page « First
  • Previous page ‹‹
  • …
  • Page 9
  • Page 10
  • Page 11
  • Page 12
  • Page 13
  • Page 14
  • Page 15
  • Page 16
  • Page 17
  • …
  • Next page ››
  • Last page Last »
Logo
  • LinkedIn
  • X
  • Bluesky
  • Youtube
Subscribe to our Newslettermail icon

JGI Footer

  • About
  • Contact
  • Careers
  • Media

Analyze Data Footer

  • Analyze Data
  • JGI Portals
  • Data Ecosystem
  • How to Use Our Systems

Work With Us Footer

  • Work With Us
  • User Programs
  • Offerings & Capabilities
  • Educational Partnerships
  • Events

User Science Footer

  • User Stories
  • Science Stories
  • Genome Insider
  • Announcements
  • Publications
  • Approved Proposals
© 1997-2025 The Regents of the University of California

JGI Footer Utility

  • Disclaimer
  • Accessibility / Section 508 Statement
  • Archives
  • Site Feedback
Logo

Berkeley Footer

  • Contact
  • Visit Us
  • Subscribe
  • X
  • LinkedIn
  • Instagram
  • Facebook
  • Youtube
Logo
Lawrence Berkeley National Laboratory is a U.S. DOE Office of Science
national laboratory managed by the University of California.

Berkeley Footer Utility

  • Staff Directory
  • For Employees
  • Emergency Status
  • Privacy & Security Notice
  • Site Feedback