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University of California, Merced Internship Program
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… novel technique to access high-quality genomic information using minute quantities of DNA derived from individual … cell (seen here in a glass capillary), researchers sequenced and assembled the first complete genome of an …
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Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.,
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Dispatches From JGI Interns
… deep dives into genomics, computational tools, and big data.  …
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Ancient Algae Reveal Secrets of Plant Evolution
… and multicellularity enabled plants to develop complex structures and adapt to changing environments — ultimately … Berkeley National Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which … (grant agreement no. 101001675). … Zygnema on PhycoCosm … Dataset …
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Waiting to Respire
Communications , two research teams joined forces and data sets to describe bacterial genomes for related … fellow Paula Matheus Carnevali was working with a group of metagenome-assembled genomes (MAGs) dubbed Margulisbacteria, … Carnevali and Schulz sharing co-first authorship. Their data suggests that the shared common ancestor of all five …
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JGI-UC Merced Interns Share Their 2021 Experiences
… … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration of Phage Impact on … Transcriptomes of Rice and Arabidopsis Roots … Making Big Data Metagenomic Clustering Scalable … Cataloging Lineage …
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Anna Ratner
… is working on the display and visualization of large omics data. …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Dan Rokhsar
… and animals by combining computational genome analysis, sequence-based genetic methods, and comparative … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, … Genomics and Computational Biology … Education … Selected Publications … Awards and Honors …
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Jinghua Jenny Huang
… of large amount isolate genomic and metagenomic data stored in Oracle databases, Berkeley DB and files in various formats. …
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