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Adaptations to marine versus terrestrial low temperature environments as revealed by comparative genomic analyses of the genus Psychrobacter
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New Research Sheds Light on Diversity in the Deep Sea
… and other microorganisms that live there.  Researchers from Portland State University and the University of Wisconsin-Madison collected 40 samples from five oceanic regions to better understand how these …
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JGI Hosts GPU Hackathon in May
… and the code owners will be able to get assistance from mentors and a team to port their code to a new … From our partners …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes
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Crysten Blaby-Haas
… She earned her PhD in Microbiology and Cell Science in 2011 from the University of Florida, working with Valérie de … biology and reverse genetics to test those hypotheses. From 2011 – 2015, she worked with Sabeeha Merchant at UCLA … (2017) Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, …
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Busting the Unbreakable Lignin
… skeleton. It’s more complex, and poisons enzymes and the  microbes that make them. It’s known that aerobic fungi, like …
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Intersubunit Coupling Enables Fast CO2‑Fixation by Reductive Carboxylases
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The Expanding Universe of Methane Metabolisms in Archaea
… provided by the other study co-authors, and reconstructed from these 10 metagenome-assembled genomes (MAGs) … because the database already contains metagenome datasets from a variety of environments, as well as tools for … Of the 10 MAGs reconstructed in the study, five were from undersampled or previously undescribed lineages, and …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral … lineages Margulisbacteria and Saganbacteria that diverged from the bacterial tree before Cyanobacteria and its … Saganbacteria. At the same time, working with researchers from the Bigelow Laboratory for Ocean Sciences, Microbial …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… the University of California, Riverside and Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome … Olpidium is a link in the evolution and transition of fungi from aquatic to terrestrial habitats. The work is part of … of binning methods, we were able to recover Olpidium sequences from the “contaminated” genome data with strong …
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Nikos Kyrpides
… et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . 6(7):960-970. … ASM’s USFCC/J. Roger Porter Award (2018) Honorary Doctorate from the Aristotle University of Thessaloniki (2017) The van …
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