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Cultivating Symbiotic Antarctic Microbes
… in understanding the genomic basis and ecological consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … native microbes. Metagenomes from enrichment cultures were sequenced and assembled by the JGI. From these assemblies, …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem … UEA and including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … After isolating the algal communities on filters, they sequenced DNA ‘marker’ gene sequences to identify the …
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The Big Deal About Short Plants
… uniquely powerful in helping scientists link plant genetic sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… sequencing from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … changing salinity of the environment. ( The annotated algal genome is available on the JGI’s PhycoCosm data portal.) … conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis … from natural Arabidopsis populations around Europe. The JGI sequenced and annotated 41 fungal isolates from the …
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Tanja Woyke
Woyke pursued her postdoctoral research at the DOE Joint Genome Institute in 2004. The main object of her research … al. 2022. Giant virus biology and diversity in the era of genome-resolved metagenomics. Nature Reviews Microbiology … et al. 2017. Minimum information about a single amplified genome (MISAG) and a metagenome- assembled genome (MIMAG) of …
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Finished Genome of Zymomonas mobilis subsp. mobilis Strain CP4, an Applied Ethanol Producer
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ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies
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BIGMAC : breaking inaccurate genomes and merging assembled contigs for long read metagenomic assembly
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MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
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Genomic evidence for the degradation of terrestrial organic matter by pelagic Arctic Ocean Chloroflexi bacteria
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Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota
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