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Draft genome sequence of Paenibacillus turicensis DSM 14349T from cerebrospinal fluid of a patient in Switzerland.
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… Research Scientific Computing Center (NERSC), the DOE Joint Genome Institute (JGI), and the Energy Sciences Network … award recognized the release of MetaHipMer, an end-to-end genome assembler that supports “an unprecedented assembly of … that will enable scientists to explore and collect data in new ways,” she said. “We’re excited to be able to offer this …
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JGI@25: Solving the Mystery of the Missing Oil
… a former Berkeley Lab environmental biologist and current holder of the University of Tennessee-Oak Ridge National … cell genomics expertise led to the identification of a new “oil-seeking” species related to Oceanospirillales , …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community … they called the Hungate1000, a catalog of 410 rumen microbe genomes. The project relied upon resources from laboratories … than DNA alone. “It has become a tool widely used,” Leahy told JGI recently when we caught up with her. “… We are very …
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iPHoP: A Matchmaker for Phages and their Hosts
… prediction approaches, researchers have created a new program called iPHoP (pronounced “eye-pop”,  freely … led by scientists at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … in the IMG/VR database, the iPHoP program generated many new high-confidence host predictions across a variety of …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… appointments at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … DNA floats freely within the cytoplasm of their cells. This newly discovered species of bacteria keeps its DNA more … ,” Gonzalez-Rizzo explained. “This kind of discovery opens new questions about bacterial morphotypes that have never …
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JGI@25: Studying Sorghum’s Survival Skills
… climate has earned it a place on the JGI’s Flagship Plant Genome roster. Sorghum has an important feature in common … In 2009, the JGI sequenced and analyzed the first reference genome for Sorghum bicolor . Since then, 2,993 publications, … 107 patent applications, and 53 patents have cited that genome. Since publishing that original reference genome, the …
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Yasuo Yoshikuni
… of non-model yeasts for production of biofuels and renewable chemicals, developing genome engineering tools for non-model organisms, modulating … sustainable and cost-effective biomass for production of renewable fuels and chemicals.  …
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Near-Complete Genome Sequence of Zygosaccharomyces rouxii NRRL Y-64007, a Yeast Capable of Growing on Lignocellulosic Hydrolysates
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Methanogenesis and Salt Tolerance Genes of a Novel Halophilic Methanosarcinaceae Metagenome-Assembled Genome from a Former Solar Saltern
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The ancient Salicoid genome duplication event: A platform for reconstruction of de Novo gene evolution in Populus trichocarpa
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Mediterranean grassland soil C–N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms
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