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Ancient Algae Reveal Secrets of Plant Evolution
… enhanced our understanding of how early plants transitioned from water to land. Key gene groups involved in stress … Berkeley National Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which … plants to transition to terrestrial life.  These led to highly detailed assemblies for three strains of  Zygnema …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Crysten Blaby-Haas
She earned her PhD in Microbiology and Cell Science in 2011 from the University of Florida, working with Valérie de … biology and reverse genetics to test those hypotheses. From 2011 – 2015, she worked with Sabeeha Merchant at UCLA … (2017) Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… for Ocean Sciences described a novel technique to access high-quality genomic information using minute quantities of DNA derived from individual environmental cells. The proof of principle … cell (seen here in a glass capillary), researchers sequenced and assembled the first complete genome of an …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… the University of California, Riverside and Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome … fungi, given that the intricate flagellar apparatus is highly unlikely to regain once it is lost. Depending on the … of binning methods, we were able to recover Olpidium sequences from the “contaminated” genome data with strong …
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Tracking the Origins of Methane-Producing Microbes
… user facility, report the discovery of a novel archaeum from a hot spring that has the genetic machinery to perform … the microbes into small pools of cells that were then sequenced separately. From these samples, 111 … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that …
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Metabolic versatility of the nitrite-oxidizing bacterium Nitrospira marina and its proteomic response to oxygen-limited conditions
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The JGI Data Portal: Improving User Experience
JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal … are more broadly applicable to the download processes from the other JGI Portals, as well. “For thousands of … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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The JGI announces 2024 awardees for our Community Science Program annual call
From left to right: [above] Olivia Ahern, Adriana Corales, …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… and Data Collaboration Center (CODCC), is led by a team of highly experienced investigators from institutions including the University of Maryland and … collection of UViGs by identifying contiguous viral sequences (“contigs”) from thousands of ecologically diverse …
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