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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … of rumen-digested switchgrass, researchers isolated and sequenced DNA from rumen microbes involved in the digestion … the enzymes that make the rumen such an efficient biomass-degrading environment and transfer that ability into …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and … The Impact This study illustrates how the research community brings together the data resources enabled by the … each genome. The final dataset – available to the research community on an online interactive browser – contains the …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of … published in the journal  Developmental Cell and provides a community resource that could help researchers track cell …
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on presentations to … of biology and computer science, to reveal clues about how microbial and bacteria communities influence the … Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial communities mediate Sphagnum peatmoss resilience …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and … at Lawrence Berkeley National Laboratory through the Community Science Program . The comparative framework provided by these high quality reference genome sequences could help researchers better understand related …
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FICUS Overview
The Facilities Integrating Collaborations for User Science (FICUS) initiative was established …
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JGI Workshop at SIMB NP Meeting
Jan. 7: New Capabilities to Study Secondary Metabolism   … expressing a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE …
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VEGA Symposium
Hosted by the JGI and co-organized with NIST,  the goal of the Viral EcoGenomics & … symposium was to bring together a “Viral EcoGenomics” community to foster discussion on how to best capture and …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after …
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Building Sphagnum Genomic Resources
Sphagnome data would enable researchers’ insights on their potential … carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are developing … being assembled. These resources would provide the research community with the ability to address questions such as …
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The More the Merrier: Making the Case for Plant Pan-genomes
Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with … Context For the study, partly enabled by the JGI’s  Community Science Program , the team generated reference …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program … to contribute towards a diverse workforce and scientific community (working with the JGI) as well as our efforts in …
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