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Understanding Wildfire Recovery, Starting in Soil
… across a spectrum of burned soils. By connecting microbial genes with functions useful for forest recovery, this study … which microbes in the soil persist after a wildfire — and why they thrive — gives forest managers more avenues to … builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful snapshot of what soils …
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Microbial Community Field Surveys Reveal Abundant Pseudomonas Population in Sorghum Rhizosphere Composed of Many Closely Related Phylotypes
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Marker-free carotenoid-enriched rice generated through targeted gene insertion using CRISPR-Cas9
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Jane Grimwood Named HudsonAlpha Genomics Chair
… A 2021 Nature paper announcing a high-quality reference sequence of the complex switchgrass genome , using samples … and are exploring improvements to switchgrass through more targeted genome editing techniques. A 2020 Nature … Center), HudsonAlpha and the JGI also identified a gene related to seed dispersal in wild populations for the …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… subspecies broaden understanding of the terpene synthase gene family across eucalypt lineages. The Science From the … subspecies variegata genomes allowed researchers to study the conservation and evolution of the genes … revealed the largest number of TPS genes of any currently sequenced plant, a number closely followed by E. globulus . …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida high school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators peer through the waters … scientific knowledge, they are also equipping the next generation of scientists that will help shape all of our …
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Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing
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RETRACTED ARTICLE: Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi
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High-quality RNA extraction and the regulation of genes encoding cellulosomes are correlated with growth stage in anaerobic fungi
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Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome … but we can already provide raw mapping files as well as gene- and contig-level coverage. Other related products Q:  … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Making a Lichen Together
… hundreds of microalgae are able to partner to form lichens. Studying the symbiosis by investigating a lichen’s genomes … and the microalga,  Asterochloris glomerata . To see how gene expression changes when living together versus apart, … nitrocellulose filters in Petri dishes. The scientists also sequenced the fungus and photobiont’s genomes and compared …
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