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… species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple sets … and their complex genomes are more difficult to sequence and assemble, in turn limiting the use of modern, … sets of chromosomes to produce a monoploid reference sequence. For the highly polyploid sugarcane, an …

… fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis identified … a mycobiome culture collection consisting of fungal species from natural Arabidopsis populations around Europe. The JGI sequenced and annotated 41 fungal isolates from the …

… measurements of primary and secondary metabolites from plants, microorganisms, and environmental samples using … health is outside of JGI’s mission. However, analysis of novel secondary metabolites from plants could be a good.  … transcriptome analysis and 8 replicates for metabolomics. Why is this? A:  We did a pilot experiment with the JGI to …

… Sequence-based studies — from metagenomics to single-cell work — have quickly … of these approaches. One way of detecting giant viruses in sequence data is read-mapping: using giant virus reference … In 2020, a JGI-led team used this approach to deliver novel viral genomes from freshwater, sewage, and marine …