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From Competition to Cooperation
… fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a … these results validate how mycorrhizal fungi play an integral role in soil carbon storage. Summary There are … relationships outside of the root cells) lineages. To learn why, researchers analyzed 135 fungal genomes representing …
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Year in Review: JGI’s 2018 Progress Report Available Now
… Yosemite National Park, taken by JGI’s own Jon Bertsch. Microbes isolated from Mono Lake were sequenced by the JGI (isolates here , here and here ), and the data has been used to better understand arsenic mobility and to better …
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Data Policy & Support
… Read our research integrity and data code of conduct. … JGI Scientist Code of Conduct …
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Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… In  Nature Communications , researchers describe a strategy to recover high value products from human waste. They   … hydroxyapatite, a high-value biomaterial with a wide range of industrial applications. The team was led by researchers … removing the organic matter before it re-enters the environment. Urine accounts for just 1% of wastewater, but it …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … that showcase our collaborations and capabilities to enable great science that will help solve energy and … of the JGI; and Scott Jackson of the University of Georgia sequenced and analyzed the genome of the common bean. That …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… organisms can do. And we need the field’s context to see why it matters.” As his career progressed, Hungate has gotten more interested in microbes with the potential to impact global climate change, … these amazing technologies that the JGI has to identify and sequence who’s making what, that the context at a microscale …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … development of novel computational tools to identify virus sequences, the design of new experimental approaches to link … al., 2023. iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses …
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Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes
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A Powerful Technique to Study Microbes, Now Easier
… collaborated with JGI scientists on an ambitious project: to bring in robots to help process experiments that measure microbial activity …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and organisms than … before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. Last … ecologist and JGI user Trina McMahon has been sampling microbes at Lake Mendota, which borders the University of …
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Team Science Reveals Important Protein in Poplar
… crops The Science Scientists at Brookhaven National Laboratory (BNL) led a team that  identified a protein … disease resistance.  The Impact With increased lignin and iron, engineered poplar can be used to develop bioproducts … Described as the “DOE Tree,” poplar is considered one of the  Flagship Plants for the U.S. Department of Energy …
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