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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Initiative. Brassicales is represented by more than 4,700 species, and the proposal focuses on investigating the … to as natural products, the proposal includes plans to sequence several thousand Actinobacteria strains and then … through photosynthesis, but only a fraction have been sequenced.  Adriana Lopes dos Santos from Singapore’s …
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Metabolomics
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Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds
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A More Intuitive Phytozome Interface
… Questions about the transition from Phytozome v12 to v13. Why is it necessary to retire Phytozome v12? The codebase … preset for the gene in question, so you can download sequences, annotations, and gene structures. These genomes’ … They include Jalview (for viewing and modifying multiple sequence alignments). Variation view on individual gene …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… National Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet plants and released a very high quality reference S. viridis genome sequence. Analysis of these plant genome sequences also led … Kellogg added, and shattering genes may be specific to species or groups of species.  The genome data also revealed …
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Examples: Successful LOIs & Submissions
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome … metagenomes can I submit?  How deeply are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), … count toward the 1Tb cap. PacBio metagenomes are currently sequenced without pooling, which yields ~ 180 Gb of data per …
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Hiroshi Otani
… is particularly interested in understanding how, when and why microbes decide to produce which metabolites. …
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Phylogenomics and genetic analysis of solvent-producing Clostridium species
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JGI announces first round of 2023 New Investigator awardees
… our tools with a widening circle of researchers. That’s why twice each year we look for novel research projects — …
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Genome sequence of Phaeobacter inhibens type strain (T5T), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens
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